Boutique hotels in San Diego
Find the Top Boutique hotels in San Diego – 60+ Quality Options from Leading Providers
1-50 out of 67 hotels
Sort by:
high popularity
- Price: low to high
- Price: high to low
- Guest rating: high to low
- Popularity: high to low
From
US$ 175
/night
- Rooftop bar with stunning sunset views
- Grand Club lounge access for exclusive dining
- Indoor arcade area for family fun
From
US$ 212
/night
- Stylish rooftop pool with city skyline views
- Pet-friendly with no extra charge for pets
- Daily wine hour for a refined experience
8.2
Great11 review10
- Rooftop Bar
- Nobu Restaurant
- Fitness Center
2.2 km from City Centre300 m from San Diego Convention Center
From
US$ 172
/night
- Fender guitar borrowing experience
- Vibrant rooftop bar with stunning views
- Diverse dining options including Nobu
- Bayfront Spa
- Event Spaces
- Outdoor Pool
2.6 km from City Centre300 m from San Diego Convention Center
From
US$ 120
/night
- Bayfront spa with transformative experiences
- Diverse dining with coastal-inspired cuisine
- Spacious outdoor event spaces available
Hotel
- Rooftop Pool
- Spa Sanctuary
- Dining Venues
2.0 km from City Centre400 m from Petco Park
From
US$ 410
/night
- Rooftop pool with stunning city views
- Six diverse dining destinations for food enthusiasts
- Luxury suites offering skyline and bay views
- Marina Kitchen
- Bayside Lounge
- Hideaway Spa
2.2 km from City Centre600 m from Seaport Village
From
US$ 192
/night
- Stunning bay view rooms
- On-site full-service spa
- Interactive games at Bayside Lounge
- Beachfront Spa
- Exotic Wildlife
- Diverse Dining
11.3 km from City Centre
From
US$ 150
/night
- Exotic wildlife encounters with vibrant parrots
- Relaxing beachfront spa with tropical treatments
- Diverse dining options with ocean views
Resort
9.2
Perfect11 review10
- Full-service marina
- Day spa
- Golf putting course
9.1 km from City Centre1.3 km from Belmont Park
From
US$ 351
/night
- Unique lagoon with local wildlife
- Family-friendly activities and amenities
- Multiple outdoor bonfire pits
- Rooftop Bar
- Fitness Center
- Event Spaces
4.0 km from City Centre600 m from Fashion Valley Mall
From
US$ 73
/night
- Award-winning restaurant with craft cocktails
- Four-story waterslide for family fun
- Central location near top attractions
- Rooftop Pool
- Fitness Center
- Pet-Friendly
1.5 km from City Centre1000 m from Petco Park
From
US$ 143
/night
- Rooftop pool with skyline views
- Diverse dining at Bronze Bird restaurant
- Complimentary harbor cruise tickets included
- Heated Pool
- On-site Spa
- Tennis Courts
17.1 km from City Centre
From
US$ 139
/night
- Family-friendly amenities for kids
- Spacious swimming pool with lap lanes
- High-quality dining options on-site
- Rooftop Bar
- Fitness Center
- Dining Options
1.9 km from City Centre400 m from Petco Park
From
US$ 189
/night
- Rooftop bar with stunning city views
- Pet-friendly amenities and services
- Proximity to Petco Park events
- Heated Pool
- Outdoor Yoga
- On-Site Dining
From
US$ 129
/night
- Stunning marina views from every room
- Complimentary paddle board activity available
- Heated pools for year-round enjoyment
- Rooftop Bar
- Health Center
- Event Space
1.7 km from City Centre500 m from USS Midway Museum
From
US$ 260
/night
- Spectacular bay and city views
- Italian-inspired speakeasy dining
- Elegant indoor and outdoor venues
Hotel
9.2
Perfect11 review10
- Yoga Studio
- Spa Services
- Valet Parking
1.4 km from City Centre1000 m from Seaport Village
From
US$ 126
/night
- Historic boutique hotel with unique character
- Complimentary bicycle rentals for guests
- Free dog treats for pet guests
Hotel
5.0
Guest rating22 reviews10
- Outdoor Pool
- Firepit Lounges
- Waterfront Dining
6.2 km from City Centre
From
US$ 148
/night
- On-site concert venue with live performances
- Tropical landscaping with koi ponds
- Private marina for water activities
Hotel
- Ocean-view pool
- Private villas
- Mediterranean Room
17.3 km from City Centre300 m from La Jolla Cove
From
US$ 309
/night
- Breathtaking ocean views from dining areas
- Mediterranean-inspired dining with live music
- Iconic Spanish-style architecture and charm
Resort
- Spa Services
- Golf Course
- Event Spaces
34.9 km from City Centre
From
US$ 333
/night
- 18-hole championship golf course
- Award-winning on-site dining options
- Tranquil spa with saline pool
- Heated pool
- Hot tub
- Pet-friendly
4.2 km from City Centre1.4 km from Old Town San Diego State Historic Park
From
US$ 94
/night
- Fully-equipped kitchens in every suite
- Outdoor heated pool with hot tub
- Free hot breakfast with made-to-order items
Hotel
- On-site dining
- Fitness center
- Historic courtyard
1.9 km from City Centre600 m from Petco Park
From
US$ 168
/night
- Historic Victorian decor and ambiance
- On-site dining with live jazz entertainment
- Charming courtyard for relaxation
- Rooftop Pool
- Fine Dining
- Yoga Classes
1.3 km from City Centre1.0 km from Petco Park
From
US$ 317
/night
- Rooftop bar with stunning city views
- Pet-friendly with special amenities
- Complimentary evening wine social hour
Hotel
- Ocean view pool
- Private balconies
- Beach equipment rentals
12.2 km from City Centre
From
US$ 470
/night
- Four-Diamond beachfront luxury accommodations
- Direct beach access from hotel
- Heated ocean view pool
- Rooftop Lounge
- Business Center
- Fitness Center
2.1 km from City Centre200 m from Petco Park
From
US$ 194
/night
- Unparalleled city views from rooftop lounge
- Award-winning rooftop bar with craft cocktails
- Located in historic Gaslamp entertainment district
9.2
Perfect11 review10
- Outdoor Pool
- Fitness Centre
- On-Site Restaurant
4.7 km from City Centre
From
US$ 152
/night
- Stunning marina and harbor views
- Complimentary airport shuttle service
- Kid-friendly pool areas
- Rooftop Restaurant
- Outdoor Pool
- Fitness Center
16.4 km from City Centre1.7 km from La Jolla Cove
From
US$ 316
/night
- Top floor dining with ocean views
- Newly renovated luxury guest rooms
- Free bicycle rentals for exploration
Resort
- Rooftop Lounge
- Family Rooms
- Kitchenette
1.2 km from City Centre900 m from San Diego Zoo
From
US$ 188
/night
- Proximity to Balboa Park's gardens
- Rooftop area with beautiful city views
- Historical architecture from 1926
- Fitness Center
- Business Center
- Meeting Spaces
1.3 km from City Centre1.1 km from Seaport Village
From
US$ 126
/night
- Steps from Gaslamp Quarter's vibrant nightlife
- Stylish 1960s-inspired renovated guest rooms
- ADA accessible public amenities and rooms
Hotel
- Heated Pool
- Kitchenettes
- Private Dining
17.2 km from City Centre500 m from La Jolla Cove
From
US$ 229
/night
- Stunning ocean view rooms
- Exceptional farm-to-table dining
- Historic charm since 1913
- Outdoor pool
- On-site restaurant
- Business center
From
US$ 209
/night
- Direct access to Little Italy dining
- Complimentary airport shuttle service
- Rooms with stunning bay views
- Saltwater Pool
- On-site Spa
- Unique Dining
19.1 km from City Centre
From
US$ 169
/night
- Award-winning spa with unique treatments
- Hacienda-style gardens and terraces
- On-site pet-friendly facilities available
Hotel
- Heated Pool
- Onsite Restaurant
- Outdoor Lounge
6.6 km from City Centre
From
US$ 279
/night
- Outdoor movie screenings by the pool
- Pet fish in each guest room
- Retro-themed decor throughout hotel
- Luxury Spa
- Fire Pits
- Golf Access
21.2 km from City Centre
From
US$ 329
/night
- Breathtaking golf and ocean views
- Luxury spa with coastal-inspired treatments
- Award-winning A.R. Valentien fine dining
- M Lounge
- Outdoor Pool
- Event Spaces
17.0 km from City Centre
From
US$ 145
/night
- Proximity to UCSD for medical visits
- M Lounge with complimentary snacks and drinks
- Event spaces for up to 300 participants
- Outdoor pool
- Fitness center
- Hot tub
1.2 km from City Centre1000 m from USS Midway Museum
From
US$ 153
/night
- Bay view guestrooms with skyline views
- Heated outdoor pool and jacuzzi
- Complimentary grab-and-go breakfast daily
- Indoor Pool
- Fitness Center
- On-site Restaurant
1000 m from City Centre1.3 km from Petco Park
From
US$ 67
/night
- Proximity to San Diego Symphony
- Kids club for family activities
- Live music in lobby bar
- Outdoor pool
- Fitness center
- Business center
4.0 km from City Centre1.1 km from Fashion Valley Mall
From
US$ 130
/night
- Latin-inspired on-site dining
- Spacious outdoor event terrace
- Mountain view mini suites
Hotel
- Oceanfront Lawn
- Balinese Suites
- Rooftop Terrace
17.3 km from City Centre500 m from La Jolla Cove
From
US$ 329
/night
- All-inclusive weddings with oceanfront buyout options
- Balinese-inspired suites with handcrafted furnishings
- Private rooftop with stunning ocean views
- Indoor River
- Spa Services
- Cottages
3.7 km from City Centre1.3 km from San Diego Convention Center
From
US$ 319
/night
- Indoor lazy river for unique relaxation
- Panoramic views of San Diego skyline
- Spa offering diverse wellness treatments
Resort
- Golf Course
- Saltwater Pool
- Outdoor Gardens
20.9 km from City Centre
From
US$ 99
/night
- Exclusive tee times at Torrey Pines Golf Course
- Stunning ocean and golf course views
- Relaxing saltwater pool experience
- Rooftop Pool
- On-site Restaurant
- Fitness Center
2.0 km from City Centre300 m from Petco Park
From
US$ 254
/night
- Spacious suites with full kitchens
- Complimentary homemade cookies at reception
- Rooftop pool with skyline views
- Indoor Pool
- On-site Restaurant
- Fitness Center
2.1 km from City Centre400 m from Seaport Village
From
US$ 229
/night
- Delicious made-to-order breakfast offerings
- Complimentary evening reception with snacks
- Spacious two-room premium suite layout
- M Club Lounge
- Outdoor Pool
- Event Spaces
5.6 km from City Centre
From
US$ 176
/night
- Exclusive M Club with complimentary breakfast
- Breathtaking pool with cabanas and fitness area
- Versatile event hosting with spacious venues
8.8
Great11 review10
- Outdoor Pool
- Fitness Center
- Business Center
900 m from City Centre1.4 km from Petco Park
From
US$ 119
/night
- Complimentary shuttle to local attractions
- Manager's reception with drinks and snacks
- Freshly made breakfast with various options
- Vault meeting room
- Fitness center
- On-site bar
1.3 km from City Centre1000 m from Petco Park
From
US$ 97
/night
- Historic vault used for meetings
- Stylish rooms with city views
- Bar with locally inspired cocktails
- Bay View Rooms
- Business Center
- Spa Services
1.5 km from City Centre800 m from USS Midway Museum
From
US$ 197
/night
- Breathtaking bay view rooms
- Complimentary evening social hour
- Pet-friendly accommodations
- Heated Pool
- Business Center
- Outdoor Grill
19.9 km from City Centre
From
US$ 155
/night
- Complimentary dinner three nights weekly
- Family-sized suites with separate living areas
- Outdoor barbecue area for guest use
- Outdoor Pool
- Golf Course
- Fitness Center
9.3 km from City Centre
From
US$ 105
/night
- 9-hole par 3 golf course on property
- Large outdoor pool for relaxing
- Happy hour for alcoholic beverages
9.4
Perfect11 review10
- Rooftop Deck
- French Diner
- Custom Furnishings
1.5 km from City Centre800 m from Petco Park
From
US$ 92
/night
- Rooftop deck with stunning views
- 24-hour St. James French Diner
- Historic ambiance with unique character
- Outdoor pool
- Fitness centre
- Bicycle rental
1.2 km from City Centre1.4 km from USS Midway Museum
From
US$ 199
/night
- Fully equipped kitchens in every suite
- Year-round outdoor swimming pool
- On-site fitness center available
- Outdoor Pool
- Business Center
- Fitness Center
24.3 km from City Centre
From
US$ 160
/night
- Mosaic Restaurant with local cuisine
- Stylish event spaces for gatherings
- Pet-friendly accommodations available
- 1
- 2
Saved
Save
