Boutique hotels in Tokyo
Find the Top Boutique hotels in Tokyo – 40+ Quality Options from Leading Providers
1-45 out of 45 hotels
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Hotel
MapView on map2.2 km from City Centre
From
US$ 196
/night
- Artist-designed rooms featuring Japanese aesthetics
- Art-infused dining experiences with seasonal themes
- Executive lounge with stunning skyline views
9.0
Perfect11 review10
MapView on map6.8 km from City Centre600 m from Shinjuku Station
From
US$ 254
/night
- Exclusive Club Lounge with panoramic city views
- Japanese tea ceremonies in a traditional tea room
- Luxury rooms with L'Occitane amenities and Sealy beds
Hotel
- Terrace Suite
- MORETHAN GRILL
- Bakery
7.3 km from City Centre1.1 km from Shinjuku Station
From
US$ 148
/night
- Terrace Suite for intimate gatherings
- Hyper-seasonal dishes at MORETHAN GRILL
- Bakery loved by locals and guests
Hotel
- Indoor pool
- New York Grill
- Treatment rooms
7.1 km from City Centre1.0 km from Shinjuku Station
From
US$ 352
/night
- Skyline views from New York Grill
- On-site spa with treatment rooms
- Bicycle rentals for city exploration
Ryokan
- On-site Spa
- Meeting Room
- Restaurant
800 m from City Centre800 m from Tokyo Station
From
US$ 819
/night
- Rich cultural immersion and seasonal experiences
- Luxurious spa and wellness treatments available
- Traditional wooden architecture of historical significance
- Restaurant
- Free WiFi
- Luggage storage
6.3 km from City Centre500 m from Shinjuku Station
From
US$ 496
/night
- Convenient luggage storage service
- On-site restaurant available
- Air conditioning in all rooms
Hotel
8.8
Great11 review10
- Heritage Wing
- Teppanyaki Dining
- Private Gardens
2.8 km from City Centre
From
US$ 419
/night
- Heritage Wing offers private tea ceremony room
- French, Japanese, and Chinese fine dining options
- Stunning city views from high-floor Prestige rooms
- Hot springs
- Club Lounge
- Indoor pool
3.6 km from City Centre
From
US$ 244
/night
- Natural hot spring spa and sauna
- Stunning views of Tokyo Tower
- Royal floor with exclusive Club Lounge access
Hotel
- Japanese garden
- Spa baths
- Authentic dining
7.5 km from City Centre1.6 km from Happoen Garden
From
US$ 742
/night
- Japanese-style garden with serene atmosphere
- Authentic kaiseki dining experience on-site
- Luxurious rooms with spa baths and sauna
- Dining Options
- Convenience Store
- Massage Services
2.8 km from City Centre1.8 km from The Tokyo Imperial Palace
From
US$ 114
/night
- Diverse dining with sushi and teppanyaki
- Warmly decorated rooms with wooden highlights
- Convenience store onsite for guests
Hotel
6.4
Nice11 review10
- Indoor Pool
- Dining Options
- Currency Exchange
4.3 km from City Centre1.4 km from Ueno Station
From
US$ 252
/night
- Panoramic dining with city views
- Art deco style and modern amenities
- Indoor swimming pool available year-round
Hotel
- Fitness Classes
- Concierge Service
- Outdoor Dining
6.2 km from City Centre500 m from Omotesando
From
US$ 276
/night
- On-site spa with massage and yoga classes
- Private terrace or balcony in select rooms
- Temporary art galleries on-site
- Italian Restaurant
- Massage Services
- 24-hour Reception
7.0 km from City Centre800 m from Shinjuku Station
From
US$ 167
/night
- Next to Nishi Shinjuku Subway Station
- On-site Italian restaurant offering diverse wines
- 24-hour reception with luggage storage
Hotel
- Panoramic Views
- Indoor Pool
- Skyline Dining
6.3 km from City Centre
From
US$ 201
/night
- Panoramic views of Tokyo Bay and landmarks
- Dining with skyline views on the 30th floor
- Certified for sustainability with SAKURA QUALITY
Hotel
- Fitness Centre
- Indoor Pool
- Teppanyaki Restaurant
1.8 km from City Centre1.6 km from Tokyo Station
From
US$ 278
/night
- Luxury dining with stunning Tokyo views
- Elegant flagship hotel since 1938
- Variety of guest room options available
Hotel
- Fitness centre
- Relaxation lounge
- Business centre
2.4 km from City Centre1.5 km from University of Tokyo
From
US$ 107
/night
- Japanese-style courtyard with garden
- Seasonal kaiseki dining experience
- Relaxation lounge with massage chairs
Hotel
- French Restaurant
- Smart TVs
- Ultra-fine Mist
1.0 km from City Centre1000 m from Tokyo Station
From
US$ 124
/night
- Ultra-fine mist shower for skincare
- Elegant French dining experience on-site
- Smart TVs with streaming services provided
8.2
Great22 reviews10
- Indoor Pool
- Fitness Centre
- Spa Facilities
7.6 km from City Centre
From
US$ 195
/night
- Panoramic city view rooms
- Indoor pool with spa facilities
- Diverse dining options on-site
Hotel
- Private Spa
- Club Floors
- Japanese Dining
2.7 km from City Centre1.6 km from The Tokyo Imperial Palace
From
US$ 517
/night
- Exclusive spa blending Oriental and modern techniques
- Direct subway access to 4 major Tokyo lines
- Club floors with panoramic Tokyo city views
- Club Lounge
- Dining Options
- Meeting Rooms
3.3 km from City Centre
From
US$ 274
/night
- Panoramic views from Club InterContinental Lounge
- Exclusive Yukata dressing service for summer stays
- Eight world-class dining options including teppanyaki
Hotel
- Outdoor pool
- Spa treatments
- Shopping arcade
3.2 km from City Centre
From
US$ 205
/night
- Views of iconic Tokyo Tower
- On-site spa with pampering treatments
- French-Japanese cuisine dining experience
9.8
Perfect11 review10
- Open-air terrace
- Concierge service
- In-room massage
4.0 km from City Centre1.7 km from Ueno Station
From
US$ 177
/night
- Chic rooms with dark-wood furnishings
- Open-air terrace with Tokyo Skytree views
- Stylish French dining on-site
- Furutoshi Restaurant
- 24-hour reception
- Electric kettle
1.2 km from City Centre1.1 km from Tokyo Station
From
US$ 276
/night
- Stylish modern rooms with artful decor
- European cuisine at on-site restaurant
- Aromatherapy treatments available on-site
Hotel
- Indoor pool
- Fine dining
- On-site spa
1.1 km from City Centre1000 m from Tokyo Station
From
US$ 603
/night
- Rolls-Royce airport transfers available
- Luxurious spa with aromatherapy showers
- Japanese-inspired room designs with mood lighting
8.6
Great22 reviews10
- Japanese Garden
- Luxury Spa
- Unique Dining
6.4 km from City Centre400 m from Shinagawa Station
From
US$ 193
/night
- Japanese garden with 200 cherry blossom trees
- Spa with dry and mist saunas
- Dining blends Italian and Japanese cuisines
9.8
Perfect11 review10
- Japanese Garden
- Teppanyaki Dining
- Indoor Pool
5.9 km from City Centre300 m from Happoen Garden
From
US$ 147
/night
- Tranquil Japanese garden with lush greenery
- Premium teppanyaki featuring Yamaguchi beef
- Accessible rooms with mobility-friendly features
- Michelin Dining
- Onsen Baths
- Spa Services
500 m from City Centre400 m from Tokyo Station
From
US$ 453
/night
- Three-Michelin-starred Sézanne dining experience
- Direct Tokyo Station platform greeting service
- Private traditional Japanese onsen baths
- Club Lounge
- Teppanyaki Restaurant
- Fitness Center
6.6 km from City Centre200 m from Shinagawa Station
From
US$ 286
/night
- Exclusive Club Lounge with panoramic city views
- Direct indoor access to Shinagawa Station
- Musically inspired dining with live performances
Hotel
- Massage
- Luggage Storage
- Flat-Screen TV
2.5 km from City Centre1000 m from The Tokyo Imperial Palace
From
US$ 89
/night
- 1-minute walk from Hanzomon Subway Station
- Daily buffet breakfast with local specialties
- Stylish rooms with tea/coffee facilities
- Air Conditioning
- Massage
- Restaurant
3.8 km from City Centre
From
US$ 133
/night
- 1-minute walk from Roppongi Subway Station
- On-site restaurant serving diverse cuisine
- On-site massage services available
Hotel
- Massage
- Laundry
- Restaurant
7.5 km from City Centre
From
US$ 77
/night
- Deluxe multi-head shower in each room
- On-site Italian restaurant with wood-oven pizza
- Rental notebook PCs for guest convenience
5.0
Guest rating33 reviews10
- Launderette
- Air purifier
- Breakfast corner
1.8 km from City Centre
From
US$ 119
/night
- Complimentary coffee in the lobby
- Varied Japanese and Western breakfast buffet
- Air purifier and humidifier in rooms
Capsule hotel
- Public Bath
- Massage Chair
- Flat-screen TV
6.1 km from City Centre300 m from Shinjuku Station
From
US$ 53
/night
- Male guests only capsule accommodation
- Complimentary breakfast and green tea
- Public bath with spa facilities
- On-site Spa
- Electric Kettle
- Yukata Robes
7.3 km from City Centre700 m from Shibuya Crossing
From
US$ 131
/night
- Original mattress optimising weight distribution
- Foot and full body massage services available
- Modern rooms with soothing tones and amenities
- Ristorante San Michele
- LCD TV
- Air conditioning
900 m from City Centre900 m from Tokyo Station
From
US$ 147
/night
- European-style decor and classical charm
- Italian cuisine at Ristorante San Michele
- Close to major Tokyo attractions
Hotel
9.2
Perfect11 review10
- Imperial Palace
- On-site Dining
- Massage Services
2.3 km from City Centre900 m from The Tokyo Imperial Palace
From
US$ 156
/night
- Views of the Imperial Palace gardens
- Diverse on-site dining options available
- Massage services for relaxation
- Flat-screen TV
- Coin-launderette
- Electric kettle
2.7 km from City Centre
From
US$ 48
/night
- Complimentary breakfast with fresh fruits
- Modern rooms with flat-screen TVs
- Coin-launderette for guest convenience
- Private Sauna
- Karaoke Room
- Flat-screen TV
6.0 km from City Centre900 m from Shinjuku Station
From
US$ 136
/night
- Private sauna and spa bath in rooms
- Rooftop karaoke for entertainment
- Adults-only atmosphere for privacy
- Outdoor pools
- Fitness centre
- Event gardens
6.6 km from City Centre500 m from Shinagawa Station
From
US$ 102
/night
- Seasonal outdoor pools with sun loungers
- Spacious gardens for relaxation and events
- Fitness centre and massage services available
- Free breakfast
- 24-hour reception
- Luggage storage
1.4 km from City Centre1.5 km from Tokyo Station
From
US$ 91
/night
- Free breakfast buffet and coffee
- 24-hour front desk service
- Air-conditioned rooms with LCD TV
- BBQ Restaurant
- Craft Brewery
- Terrace Bar
2.0 km from City Centre
From
US$ 63
/night
- Craft brewery and BBQ restaurant onsite
- Rooftop terrace with Sumida River views
- Temporary art galleries featured regularly
Hotel
- Bar lounge
- Beauty salon
- Fitness centre
2.6 km from City Centre1.3 km from The Tokyo Imperial Palace
From
US$ 226
/night
- Rooftop lounge with Imperial Palace views
- On-site beauty salon and acupuncture therapy
- French bistronomy restaurant on-site
- Massage
- Flat-screen TV
- Luggage storage
3.2 km from City Centre
From
US$ 132
/night
- Air-conditioned rooms with modern amenities
- 24-hour reception and security services
- On-site massage for relaxation
Capsule hotel
- Hot tub
- Public bath
- Air conditioning
7.5 km from City Centre900 m from Shibuya Crossing
From
US$ 23
/night
- Female-only accommodation
- On-site hot tub
- Safe environment and 24-hour security
Hotel
- On-site café
- Convenience store
- Massage services
7.6 km from City Centre
From
US$ 84
/night
- 2-minute walk from Ikebukuro Station
- Café and convenience store on-site
- Massage services available
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